Software

Software

GitHub:dmattek
 

FreeClust

An R/Shiny web-app for easy interactive hierarchical clustering with cluster validation.
 
The source code available on GitHub.
A running instance on shinyapps.io.
An accompanying publication in Analytical Chemistry journal.
 

Time Course Inspector

An R/Shiny web-app for interactive hierarchical clustering and cluster validation of time series.
 
The source code available on GitHub.
A running instance on shinyapps.io.
An accompanying publication in Bioinformatics journal.
Screencast of using TCI to process time series data.
 

Plate Viewer

A web-based viewer of images from fluorescent microscopy based on OpenZoom and OpenSeaDragon toolkits for viewing gigapixel images.
 
Scripts to prepare the website with accompanying pyramid images in dzi formats available on GitHub.
 
An online demo for a drug screen imaged in a 384-well plate. Each well consists of 16 fields of view, each image acquired in 3 channels. The montage in the online viewer is a ~7-GigaPixel image.
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